A phytosociological survey of the Irish Molinio-Arrhenatheretea using computer techniques

Summary The Irish approach to the computer processing of grassland relevés is introduced. A suite of programs in Fortran IV has been developed for the purpose. The preparation and analysis of the relevés using these programs is explained. The cost and ecological effectiveness is discussed. It is concluded that the approach is not radically different to the familiar Braun-Blanquet technique of tabular comparison of relevés.Contribution from the Working Group for Data-Processing in Phytosociology, International Society for Vegetation Science.     

Bryophyte evolution and geography

The three extant Divisions comprising the bryophytes extend, as fossils, well back into Palaeozoic time. Bryophyte origin is part of the rise of terrestrial, vascularized, plants with sporopollenin-walled spores in the Silurian. Before the end of Carboniferous time, bryophyte lines were widely present. Separation of Gondwana and Laurasia by the Permian Tethys Sea and subsequent widespread desert episodes fragmented an already diversified bryoflora subjecting it to intense selective pressure. The cool, mesic climate of southern Gondwana provided a refugium for austral bryophytes. Warmer and drier climates of the Permo-Triassic Laurentian-Laurasia favoured drought-adapted or niche-specific groups creating marked systematic discontinuities. The Angaran wet, probably cool, temperate region provided refuge for basic stock for much of today's rich holarctic and wet ‘tropical’ bryofloras. Climatic changes, correlated with tectonic events and the rise of angiosperms, opened habitats favourable for a diversity explosion. Despite demonstrated potential for long-distance dispersal, modern distributions are mostly linked with total floras or establishment on islands prior to niche saturation. Remnants of Gondwanan bryoflora persist in high southern latitudes as disjunctions with the possibility that the folded ranges of the African Cape have been an insular fragment at higher latitudes becoming attached shortly after angiosperm diversification. Floras of southern India and east Africa have common features but the Himalayan flora shows evidence that the Gondwanan flora of the Indian plate was lost during the movement through desert and tropical latitudes; neotropical and palaeotropical floras are distinctive. Much of the northern Australian bryoflora is recently Malesian-derived while the southeast shows strong austral influence and commonality with New Zealand. Tropical Pacific island floras are mostly Malesian-derived but with both holarctic and austral elements present as in Hawaii and the Society Islands. Holarctic bryoflora is circum-polar with temperate areas of Euro-American and far eastern elements floristically bound by disjunct and vicariad species. Kroeber Coefficients of Correlation differ as Pacific island floras are compared and Guttman-Lingoes Smallest Space Coordinates indicates floristic subgroups within Polynesia. Although these and other mathematical treatments yield potentially promising results, the methods are yet unrefined and there is some uncertainty whether characteristics of numbers or of organisms are implicit in the summations.     

新疆药用延胡索资源调查

作者对新疆维吾尔自治区的9个市、县进行了药用延胡索的资源调查,采集植物标本70余份,弄清药用种类主要是3种,即Corydalis glaucescens Regel,C.ledebouriana Kir.et Kar.和C.schanginii(Pall.)Fedtsch.;初步了解了3种药用延胡索植物的分布状况,并对块茎中总生物碱的含量作了分析。     

Molecular evidence for Gondwanan origins of multiple lineages within a diverse Australasian gecko radiation

Aim Gondwanan lineages are a prominent component of the Australian terrestrial biota. However, most squamate (lizard and snake) lineages in Australia appear to be derived from relatively recent dispersal from Asia (< 30 Ma) and in situ diversification, subsequent to the isolation of Australia from other Gondwanan landmasses. We test the hypothesis that the Australian radiation of diplodactyloid geckos (families Carphodactylidae, Diplodactylidae and Pygopodidae), in contrast to other endemic squamate groups, has a Gondwanan origin and comprises multiple lineages that originated before the separation of Australia from Antarctica. Location Australasia. Methods Bayesian (beast ) and penalized likelihood rate smoothing (PLRS) (r 8s ) molecular dating methods and two long nuclear DNA sequences (RAG‐1 and c‐mos) were used to estimate a timeframe for divergence events among 18 genera and 30 species of Australian diplodactyloids. Results At least five lineages of Australian diplodactyloid geckos are estimated to have originated > 34 Ma (pre‐Oligocene) and basal splits among the Australian diplodactyloids occurred c. 70 Ma. However, most extant generic and intergeneric diversity within diplodactyloid lineages appears to post‐date the late Oligocene (< 30 Ma). Main conclusions Basal divergences within the diplodactyloids significantly pre‐date the final break‐up of East Gondwana, indicating that the group is one of the most ancient extant endemic vertebrate radiations east of Wallace’s Line. At least five Australian lineages of diplodactyloid gecko are each as old or older than other well‐dated Australian squamate radiations (e.g. elapid snakes and agamids). The limbless Pygopodidae (morphologically the most aberrant living geckos) appears to have radiated before Australia was occupied by potential ecological analogues. However, in spite of the great age of the diplodactyloid radiation, most extant diversity appears to be of relatively recent origin, a pattern that is shared with other Australian squamate lineages.     

Pond Acoustic Sampling Scheme: A draft protocol for rapid acoustic data collection in small waterbodies

1. Freshwater conservation is vital to the maintenance of global biodiversity. Ponds are a critical, yet often under‐recognized, part of this, contributing to overall ecosystem functioning and diversity. They provide habitats for a range of aquatic, terrestrial, and amphibious life, often including rare and declining species.
2. Effective, rapid, and accessible survey methods are needed to enable evidence‐based conservation action, but freshwater taxa are often viewed as “difficult”—and few specialist surveyors are available. Datasets on ponds are therefore limited in their spatiotemporal coverage.
3. With the advent of new recording technologies, acoustic survey methods are becoming increasingly available to researchers, citizen scientists, and conservation practitioners. They can be an effective and noninvasive approach for gathering data on target species, assemblages, and environmental variables. However, freshwater applications are lagging behind those in terrestrial and marine spheres, and as an emergent method, research studies have employed a multitude of different sampling protocols.
4. We propose the Pond Acoustic Sampling Scheme (PASS), a simple protocol to allow a standardized minimal sample to be collected rapidly from small waterbodies, alongside environmental and methodological metadata. This sampling scheme can be incorporated into a variety of survey designs and is intended to allow access to a wide range of participants, without requiring complicated or prohibitively expensive equipment.
5. Adoption of this sampling protocol would enable consistent sound recordings to be gathered by researchers and conservation organizations, and allow the development of landscape‐scale surveys, data sharing, and collaboration within an expanding freshwater ecoacoustic community—rather than individual approaches that produce incompatible datasets. The compilation of standardized data would improve the prospects for effective research into the soundscapes of small waterbodies and aid freshwater conservation efforts.

     

The eutrophication of shallow coastal lakes in Southwest England — understanding and recommendations for restoration,based on palaeolimnology,historical records,and the modelling of changing phosphorus loads

Palaeolimnological studies of sediments from Slapton Ley and Loe Pool, two coastal freshwater lakes in Southwest England, show that in the period since 1945, they have been eutrophicated by nutrient inputs from intensification of agriculture, but also from sewage effluent. Two simple models have been used to identify the main sources of catchment outputs, and in the case of Slapton Ley, to evaluate historical changes in land use, and their likely effect on lake trophic status.Restoration strategies may also be evaluated using the same models. They suggest that in order to reduce loads on either lake to within OECD permissible limits, not only will all sewage inputs need to be prevented, and non-phosphate detergents used, but also losses from agricultural land must be reduced. This could take the form of the keeping of fewer cattle (the main source of organic nitrogen and phosphorus in both catchments), or the zoning of the respective catchments so that steep slopes close to riparian zones are not used, as at present, for the grazing of livestock.A better option, however, would appear to be the establishment along most of the rivers draining into these lakes, of buffer strips of woodland at least 15 m wide. According to the models, this measure, along with treatment or diversion of sewage effluent, would reduce phosphorus loads upon the lakes to within acceptable limits.     

Perception of livestock ecosystem services in grazing areas

This study investigates how the ecosystem services (ES) linked to livestock grazing are perceived across countries. A total of 82 case studies collected from 42 countries via survey (53.7% cases from Europe and 46.3% from outside of Europe) have been analysed through a multivariate approach. In all, 18 non-provisioning ES were considered. Overall, the reported impacts of livestock grazing on the different ES were much more positive than negative. Notably, a large proportion of respondents reported either positive or very positive impacts for some cultural ES, namely cultural, historic and natural heritage (84%), knowledge systems and educational values (77%), landscape values (74%), and for some supporting and regulating ES, namely habitat provision (66%), nutrient cycling (65%), and bush encroachment/fire control (66%). Based on multiple regression analysis, geographic origin, stakeholder type and species category, as well as protection status of the grazing area, had significant effects on the perception of the impacts. Respondents reported those impacts as more positive in Europe, in protected areas and where several species were present in the grazing area. A significantly larger proportion of respondents reported recognition of ES provided by the grazing livestock population in European countries (40.9%) compared with non-European countries (23.7%). Based on the survey responses it appears that in non-European countries absence of formal recognition, especially by policy makers, is a major challenge for the continued provision of ES in grazing systems. In Europe, where such recognition is already often included in legislation, the long-term sustainability of related policies and incentives to provide such services is viewed as a major issue by the respondents.     

Phylogenetic relationships and biogeographic history of the unique Saxifraga sect. Irregulares (Saxifragaceae) from eastern Asia

Saxifraga L. is the largest genus in Saxifragaceae and a characteristic component of the herbaceous flora of the temperate and alpine mountains in the Northern Hemisphere. Section Irregulares is a small group of 15–20 species, representing one of the early‐diverged lineages in the genus characterized with unique zygomorphic flowers. We used both nuclear internal transcribed spacer and chloroplast DNA regions (psbA‐trnH, trnL‐F, and matK) to reconstruct its species relationships, estimate divergence times, and infer its historical biogeography. Our phylogenetic results corroborate the monophyly of sect. Irregulares and its sister relationship to sect. Heterisia from North America. The section was well resolved into two lineages corresponding to their morphological features and biogeographic distributions. One represents ser. Stoloniferae including S. stolonifera Curtis and S. nipponica Makino with long‐creeping stolons/rhizomes and small petals with spots and the other comprises the remaining taxa (ser. Rufescentes) which lack long‐creeping rhizomes. Spots on leaves (abaxially spotted vs. abaxially without spots) and spots on petals (without spots vs. with spots) are inferred to be phylogenetically informative within ser. Rufescentes. Divergence time estimates and ancestral area analysis suggested a western North American origin of sect. Irregulares with migration into East Asia by way of the Bering land bridge in the Middle Oligocene. The development of drying and desertification belt in the late Miocene could have played an important role in the subsequent restriction and separation of the north and south lineages within eastern Asia.     

Identifying mechanisms of genetic differentiation among populations in vagile species: historical factors dominate genetic differentiation in seabirds

Elucidating the factors underlying the origin and maintenance of genetic variation among populations is crucial for our understanding of their ecology and evolution, and also to help identify conservation priorities. While intrinsic movement has been hypothesized as the major determinant of population genetic structuring in abundant vagile species, growing evidence indicates that vagility does not always predict genetic differentiation. However, identifying the determinants of genetic structuring can be challenging, and these are largely unknown for most vagile species. Although, in principle, levels of gene flow can be inferred from neutral allele frequency divergence among populations, underlying assumptions may be unrealistic. Moreover, molecular studies have suggested that contemporary gene flow has often not overridden historical influences on population genetic structure, which indicates potential inadequacies of any interpretations that fail to consider the influence of history in shaping that structure. This exhaustive review of the theoretical and empirical literature investigates the determinants of population genetic differentiation using seabirds as a model system for vagile taxa. Seabirds provide a tractable group within which to identify the determinants of genetic differentiation, given their widespread distribution in marine habitats and an abundance of ecological and genetic studies conducted on this group. Herein we evaluate mitochondrial DNA (mtDNA) variation in 73 seabird species. Lack of mutation–drift equilibrium observed in 19% of species coincided with lower estimates of genetic differentiation, suggesting that dynamic demographic histories can often lead to erroneous interpretations of contemporary gene flow, even in vagile species. Presence of land across the species sampling range, or sampling of breeding colonies representing ice‐free Pleistocene refuge zones, appear to be associated with genetic differentiation in Tropical and Southern Temperate species, respectively, indicating that long‐term barriers and persistence of populations are important for their genetic structuring. Conversely, biotic factors commonly considered to influence population genetic structure, such as spatial segregation during foraging, were inconsistently associated with population genetic differentiation. In light of these results, we recommend that genetic studies should consider potential historical events when identifying determinants of genetic differentiation among populations to avoid overestimating the role of contemporary factors, even for highly vagile taxa.